# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_967.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_967 [L=502] Description: # 1071893 # 1073398 # -1 # ID=1_967;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.279 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00059 19.4 0.0 0.001 18.7 0.0 1.3 1 NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) fa 0.0061 16.5 0.0 0.056 13.4 0.0 2.4 1 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal ------ inclusion threshold ------ 0.041 14.3 0.0 0.16 12.4 0.0 2.1 1 DUF1829 Domain of unknown function DUF1829 Domain annotation for each model (and alignments): >> NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 1.8e-07 0.001 2 145 .. 158 303 .. 157 327 .. 0.68 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1.8e-07 SEEE-TSTTSS-HHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT--B--HHHHHHHHHH.....HHHHCHHHHHCCHHH..... CS NAPRTase 2 klhDFGtRrrsslesqeivvkalkkahlvnflGtdnvlaaakysikaaetsahealgke.....qelsafrnnlkqfqk..... 75 k+ FG+Rr++ ++s+ ++ k a+ + G +n+ ky+i+ +t+ h++++++ +e +af + k 23726_FusoPortal_Gene_967 158 KVLAFGSRRAHGFDSAVEGNK---AAIIGGCYGHSNLVTEYKYGIPSNGTMSHSYIQAFgvgaeAEKEAFVTFI----Khrrqr 234 6677************99999...899***************************98876111113333333222....222224 PP ..HHHHHHHHHHCCHIIEEECHCCTHHHHHCCS-CCHHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCS CS NAPRTase 76 ..daldlwvaiekgnlgiaLtdlvltdaflkdfrleakaylgvRpDSGdpvevieklaahygstlnskgytk 145 ++l l v +++ + i ++++ + ++ ++ + gvR DSGd + +k + + + + + ++ 23726_FusoPortal_Gene_967 235 knNSLILLVDTYD-TIHIGIENAIKAFKEC-GVNDSYEGIYGVRLDSGDLAYQSKKCRKRFDEE-GFTKAKI 303 4466666666664.4445555555444444.233334455689******999999999999887.5554444 PP >> QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.4 0.0 1e-05 0.056 46 85 .. 96 138 .. 46 140 .. 0.86 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1e-05 EEE...ESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHH CS QRPTase_N 46 eve...llvkdGervekgevvleveGsarallsaERvaLnllq 85 +++ + ++dGe v ++e v+++++++ + E +Ln++ 23726_FusoPortal_Gene_967 96 KFTgnlYAIQDGEIVYPNEPVITIKAPLIQAKILETPILNIMN 138 444446889********************************96 PP >> DUF1829 Domain of unknown function DUF1829 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 2.9e-05 0.16 1 76 [. 187 259 .. 187 263 .. 0.87 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 2.9e-05 DUF1829 1 GkSglthkFDfvipkskkqperlikvinnpnknavkkalfaweDvkeareensklyvilnDkekkisseiedalee 76 G+S l +++ + ip + +++ +i+++ + +a k+a ++ +k+ r+++++ +++l D+ ++i+ ie+a+++ 23726_FusoPortal_Gene_967 187 GHSNLVTEYKYGIPSNGTMSHSYIQAFG-VGAEAEKEAFVT--FIKHRRQRKNNSLILLVDTYDTIHIGIENAIKA 259 89**************************.555555555556..58999999999999999********99999975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (502 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 732 (0.0438009); expected 334.2 (0.02) Passed bias filter: 393 (0.023516); expected 334.2 (0.02) Passed Vit filter: 30 (0.00179512); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.32 # Mc/sec: 4560.41 // [ok]