# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_969.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_969 [L=148] Description: # 1074073 # 1074516 # 1 # ID=1_969;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.252 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.024 14.7 5.9 0.034 14.2 5.9 1.1 1 FUSC_2 Fusaric acid resistance protein-like 0.14 12.3 0.4 0.18 12.0 0.4 1.1 1 DUF3093 Protein of unknown function (DUF3093) 0.17 12.2 6.9 0.21 11.8 6.9 1.1 1 MgtE Divalent cation transporter Domain annotation for each model (and alignments): >> FUSC_2 Fusaric acid resistance protein-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 5.9 6.1e-06 0.034 31 84 .. 8 60 .. 2 66 .. 0.80 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 6.1e-06 FUSC_2 31 asaqravqRilGtvlGaflallllallpgnlalillvfilaflilffkkrnyaa 84 ++ +++++ ++Gtvl +f+++++ +l++ +i++++i++f+i ++++ n+ + 23726_FusoPortal_Gene_969 8 RVYRVIFNFLCGTVLSIFVFFIAHIWLSSLTSIIIATVIFLFYIWLVIWGNF-I 60 567889999******************9988888888888888855555444.3 PP >> DUF3093 Protein of unknown function (DUF3093) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.4 3.2e-05 0.18 13 69 .. 16 73 .. 4 80 .. 0.75 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 3.2e-05 DUF3093 13 Wllallvala.aalvaaevglavavlvaavlvalavvallalsrtrieVtdgeLrvgr 69 +l ++++++ +++ ++++ ++++ a v+++ ++++++ + ++i V+d+eL v++ 23726_FusoPortal_Gene_969 16 FLCGTVLSIFvFFIAHIWLSSLTSIIIATVIFLFYIWLVIWGNFITIIVNDKELIVKN 73 555555544425555567778888888999************************9986 PP >> MgtE Divalent cation transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 6.9 3.8e-05 0.21 41 96 .. 13 65 .. 2 69 .. 0.79 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 3.8e-05 HHHHHHHHHHHHHHHHHHHHHT-.GCSHHHHHHHHHHHHHHHHHH..HHHHHHHHH CS MgtE 41 lvvlllgvilgllifllalllgwslllalvvglslllvllaaallilgvlvplllw 96 + +l+g++l++++f++a+++ + +l ++++++ ++l++++ ++ g +++++ + 23726_FusoPortal_Gene_969 13 IFNFLCGTVLSIFVFFIAHIWLS-SLTSIIIATVIFLFYIWLVIW--GNFITIIVN 65 4568999**********999888.677777888888899999888..888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (148 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1234 (0.0738392); expected 334.2 (0.02) Passed bias filter: 478 (0.0286022); expected 334.2 (0.02) Passed Vit filter: 68 (0.00406893); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.28u 0.26s 00:00:00.54 Elapsed: 00:00:00.36 # Mc/sec: 1195.11 // [ok]