# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_981.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_981 [L=90] Description: # 1085111 # 1085380 # -1 # ID=1_981;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.352 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-16 60.0 8.6 2.6e-16 59.6 8.6 1.2 1 ATP-synt_C ATP synthase subunit C Domain annotation for each model (and alignments): >> ATP-synt_C ATP synthase subunit C # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 8.6 1.6e-20 2.6e-16 2 60 .] 17 78 .. 16 78 .. 0.98 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 1.6e-20 HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHHHHHHH CS ATP-synt_C 2 gaglavGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLivalil 60 gagla+ +++lg Gig G a+++++++var+p ++++++++++a+ae++++y L++alil 23726_FusoPortal_Gene_981 17 GAGLAM-IAGLGPGIGEGYAAGKAVESVARQPeargSIISTMILGQAVAESTGIYSLVIALIL 78 9*****.*************************99999************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (90 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 360 (0.0215414); expected 334.2 (0.02) Passed bias filter: 226 (0.0135232); expected 334.2 (0.02) Passed Vit filter: 11 (0.00065821); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.32 # Mc/sec: 817.60 // [ok]