# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_990.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_990 [L=845] Description: # 1092609 # 1095143 # 1 # ID=1_990;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.233 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-19 68.3 4.6 5.6e-18 65.6 0.3 3.4 3 DHHA1 DHHA1 domain 5.2e-12 45.8 0.4 6.3e-11 42.3 0.0 2.6 2 DHH DHH family Domain annotation for each model (and alignments): >> DHHA1 DHHA1 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 0.037 3.1e+02 6 79 .. 230 301 .. 228 307 .. 0.81 2 ! 65.6 0.3 6.7e-22 5.6e-18 3 135 .. 313 434 .. 311 436 .. 0.88 3 ? 0.0 0.2 0.12 9.7e+02 16 50 .. 670 707 .. 660 717 .. 0.78 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.037 HHHHHHHHHHHHHHCCHHHHHHHHHHTCEEET.TTEEEEEEECESHHHHHHHHHHHHHCT..STTCEEEEEEEEE CS DHHA1 6 eerkelekelelkealaklkaeellekaeevk.gvkvlvaevgeewdagalgiaadklksklkkpvivfvakeeg 79 ++rk ++k le + +++ +++ll k++ + ++k ++a++ ++ + +aa++l + k + ++++e+g 23726_FusoPortal_Gene_990 230 DNRKFVKKGLETLKNTKWIGIKQLLRKIFPDNwDTKEYFAYD-IGYIIAPIFNAAGRLED--AKQAVSLFVEEDG 301 689999999995566667889999999888889888888888.8888899999*******..9977777777665 PP == domain 2 score: 65.6 bits; conditional E-value: 6.7e-22 HHCHHHHHHHHHHHHHHCCHHHHHHHHHHTCEEETTTEEEEEEECESHHHHHHHHHHHHHCT..STTCEEEEEEEEETEEEEEE CS DHHA1 3 slneerkelekelelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegdkvkvsa 86 + n erk+++k++ l+ +a++++++l ++++++++ + + g++gi+a+k+++k++kp+i++ +ke + + s+ 23726_FusoPortal_Gene_990 313 ENNTERKDIQKKI-LEMSIAEIEKKQLY-------NKNLILVAN-KAFHHGVIGIVASKILDKYYKPTIIMEIKESEGVATASC 387 7899*********.**********9996.......555555555.89*******************888888887777****** PP EESCGSS-HHHHHHHHHHHCTEEEEEESEEEEEESCCCGHHHHHHHHHH CS DHHA1 87 rskkdgvdagellkeaaaklgggGGGHdlAaGagipaekleealealee 135 rs++ ++++ e l+ +++ + GGH AaG++i++e++ee+ ++++ 23726_FusoPortal_Gene_990 388 RSIG-DLNIVECLNS-VSDILVKYGGHSGAAGFTIKIENIEEFYVRIDR 434 ****.**********.888889999******************887776 PP == domain 3 score: 0.0 bits; conditional E-value: 0.12 H.HHHCCHHHHHHHHHHTCEEET..TTEEEEEEECESH CS DHHA1 16 e.lkealaklkaeellekaeevk..gvkvlvaevgeew 50 lk+al +++++ll + +e++ ++kvl++ ++++ 23726_FusoPortal_Gene_990 670 FpLKDALIFKEIKNLLIRDFEYNsiQKKVLASIFKDKK 707 33899999999999999999999999999999884443 PP >> DHH DHH family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.0 7.5e-15 6.3e-11 1 86 [. 72 204 .. 72 220 .. 0.74 2 ? 0.5 0.1 0.079 6.6e+02 44 57 .. 792 820 .. 722 844 .. 0.53 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 7.5e-15 EEEEE.ECSSSHHHHHH.HHHHHH.....................................CECS--TCGGCGCCHHCCCSEEE CS xxxxxxxxxxxxxxxxx.xxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxx RF DHH 1 kilivghknpDtDsigS.aialan.....................................llvDhneksqavegeakeeaedv 46 ki+i ++++D+D+i+S ++++ + + vD++++s ++++ a+e + d 23726_FusoPortal_Gene_990 72 KIYI--YGDYDVDGITSvSLLYLAfselganvnyyiplrdegyglnkeaiqilknenadlvISVDCGINSIEEINFANELNLDF 153 6999..***********888888888888888888888888888888888888888888777********************** PP EEEE-S---S............S---SS..EEEE...SSS-HHHHHHHHHHHTT CS xxxxxxxxxx............xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF DHH 47 iiiDHHrlge............efetlapilfln..epvgstaeivaelleekk 86 ii+DHH++ + ++i+ + vg + +++ l+ + + 23726_FusoPortal_Gene_990 154 IITDHHEITGgipkalavinpkR---EENIYSFKylAGVGTAFMLIYALYTQMN 204 ********999******996432...3333333200345555556666665532 PP == domain 2 score: 0.5 bits; conditional E-value: 0.079 EEEEEEE-S---S...............S CS xxxxxxxxxxxxx...............x RF DHH 44 edviiiDHHrlge...............e 57 +++ ++D+H ++ e 23726_FusoPortal_Gene_990 792 NNIKCVDYHDISIlkrnnslyypfltdeE 820 45677888888645555555555554442 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (845 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1136 (0.0679751); expected 334.2 (0.02) Passed bias filter: 461 (0.027585); expected 334.2 (0.02) Passed Vit filter: 35 (0.0020943); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.31 # Mc/sec: 7924.01 // [ok]