F. necrophorum 1_1_36S_FusoPortal_Gene_501

InterPro predicted function: RNA polymerase sigma factor 54 interaction domain
InterPro Accessions: IPR002078

Link to full Interpro analysis


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Return to complete Genome Map of F. necrophorum 1_1_36S

FASTA file of all annotated F. necrophorum 1_1_36S genes - Amino Acids | FASTA file of all annotated F. necrophorum 1_1_36S genes - DNA

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Hidden Markov Model (HMMScan) for domains: 1_1_36S_FusoPortal_Gene_501.out

Amino Acids: 571

ORF FASTA file - Amino Acids

MNFLNFILDDVKKYSEIVSKVIGMDVEVMDSSFTRIAGTGSLKEKVGLDMKEESHIYHQV LESKETIIILEPRKDMHCLTCEKKFLCKEELEISTPIMYQDDVIGVIGLICFEKYKKNEF IGKKDLYIQFLKQISEFISYKVYEYFHSLQLKRDNEILSNIIDRVQDIIILTNRKNQIEL INKKGKSILAPILKEENIYLKSSSNFLNQKEFKFSYSGKEISGIGDIFSFSLEKNKELTK TLFVFKEISEFKKYLLSFHGNSSIILLESPQMQNIYSQISKVAKNNTSILITGESGTGKE IIAKQIHDLSSYSDGPFITVNCGAIPESLMESELFGYTKGAFTGADPKGKIGFFERAHNG TIFLDEIGEMPLQIQVKMLRVLQDKKITPIGSHTEKQVNVRIIAATNRNLEQEVKKRNFR EDLFYRLSVFPIDIPPLRERKKDIKILVNFFVKKYYISFQMEQKDISTEVYQYFLEYSWP GNIRELRNTIEYCMNIIEENEKSIELKHLPPKLLNNKEKDKKIKTLAELERDAIQNLLQI YGNSSEAKKIIAKSLGIGIATLYRKIKNLEV

Coding DNA - Genome Coordinates: 521665-523380 | Orientation: Forward

ORF FASTA file - Coding DNA

ATGAATTTTTTAAACTTTATTTTGGATGATGTTAAAAAATATTCTGAAATTGTTTCAAAAGTTATAGGTA TGGATGTTGAAGTTATGGATTCCTCTTTCACTAGAATTGCGGGAACGGGAAGTTTAAAGGAAAAAGTTGG TCTGGATATGAAAGAGGAATCTCATATTTATCATCAAGTTTTAGAATCGAAAGAAACCATTATAATTTTA GAGCCCCGCAAAGATATGCATTGTCTTACTTGTGAAAAGAAATTTTTATGCAAAGAAGAATTAGAAATTT CAACTCCTATTATGTATCAAGATGATGTTATTGGTGTTATAGGGCTTATTTGTTTTGAAAAATATAAAAA AAATGAATTTATTGGAAAAAAAGATTTATACATACAATTTTTAAAGCAAATCTCAGAATTTATTTCATAT AAAGTTTATGAATATTTTCATAGTTTGCAATTAAAAAGAGATAATGAAATTTTAAGTAATATTATAGATA GAGTCCAAGATATTATTATATTGACAAATAGAAAAAATCAGATTGAATTAATTAATAAAAAAGGGAAGAG TATCTTGGCTCCCATTTTAAAAGAAGAAAATATTTATTTAAAGTCTTCTTCCAATTTTTTAAATCAAAAG GAGTTTAAGTTTTCCTATTCAGGAAAAGAAATTTCTGGTATTGGGGATATTTTTAGTTTTTCTTTAGAAA AAAATAAAGAACTTACAAAAACACTCTTTGTTTTTAAAGAAATTTCAGAATTTAAAAAATATTTGCTAAG TTTTCATGGAAATTCTTCCATTATATTATTAGAATCTCCTCAAATGCAAAATATTTATTCGCAAATATCT AAAGTTGCTAAAAATAACACTTCTATTTTAATTACAGGGGAAAGTGGAACTGGCAAAGAAATCATAGCTA AACAAATTCACGATTTAAGTTCTTACTCAGATGGGCCCTTCATTACAGTAAATTGTGGTGCTATTCCAGA ATCATTAATGGAAAGTGAACTTTTCGGCTATACCAAAGGTGCTTTTACTGGGGCTGATCCAAAAGGTAAA ATAGGTTTTTTTGAAAGAGCTCATAATGGAACCATTTTTTTAGATGAAATAGGTGAAATGCCACTTCAAA TACAAGTGAAAATGTTAAGAGTTTTACAAGATAAAAAAATTACTCCTATCGGTTCTCATACAGAAAAACA AGTTAATGTTAGAATAATAGCAGCAACTAATAGAAATTTAGAACAAGAGGTTAAAAAAAGAAACTTTAGA GAGGACTTATTCTATCGTTTAAGTGTTTTTCCTATTGATATTCCACCATTAAGGGAAAGAAAAAAAGATA TCAAGATTCTTGTTAATTTTTTTGTAAAAAAATATTACATTTCTTTTCAAATGGAACAAAAAGACATTTC AACAGAAGTTTACCAATATTTTTTAGAATATTCTTGGCCTGGCAATATTCGAGAACTAAGAAATACAATT GAATATTGCATGAATATCATAGAGGAAAATGAAAAAAGTATTGAATTGAAACATTTACCTCCAAAACTTT TAAATAATAAAGAAAAAGATAAAAAAATAAAGACATTAGCAGAATTGGAGAGAGATGCTATTCAAAATCT TTTACAAATTTATGGAAACTCTTCTGAGGCTAAAAAAATTATTGCCAAATCTCTTGGAATTGGGATTGCA ACATTATATAGAAAAATAAAAAATTTGGAAGTGTAG

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