Fully Sequenced, Assembled, and Annotated Fusobacterium genomes.

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F. nucleatum nucleatum ATCC 25586 v1

Genome map and functional annotation table
Raw genome in fasta format (2.18 mb)
DNA sequences of all 2019 protein coding genes
Amino Acid sequences of all 2019 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. nucleatum nucleatum ATCC 23726 v1

Genome map and functional annotation table
Raw genome in fasta format (2.30 mb)
DNA sequences of all 2111 protein coding genes
Amino Acid sequences of all 2111 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. periodonticum 2_1_31 v1

Genome map and functional annotation table
Raw genome in fasta format (2.54 mb)
DNA sequences of all 2388 protein coding genes
Amino Acid sequences of all 2388 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. varium ATCC 27725 v1

Genome map and functional annotation table
Plamid map and functional annotation table
Raw genome in fasta format (3.30 mb)
DNA sequences of all 2984 protein coding genes
Amino Acid sequences of all 2984 protein coding genes
Raw Plasmid in fasta format (42 kb)
Plasmid DNA sequences of all 70 protein coding genes
Plasmid Amino Acid sequences of all 70 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of GENOME functional annotations (PFAM, Interpro, GO)
CSV file of PLASMID functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. ulcerans ATCC 49185 v1

Genome map and functional annotation table
Raw genome in fasta format (3.53 mb)
DNA sequences of all 3230 protein coding genes
Amino Acid sequences of all 3230 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. mortiferum ATCC 9817 v1

Genome map and functional annotation table
Raw genome in fasta format (2.71 mb)
DNA sequences of all 2631 protein coding genes
Amino Acid sequences of all 2631 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. gonidiaformans ATCC 25563 v1

Genome map and functional annotation table
Raw genome in fasta format (1.68 mb)
DNA sequences of all 1617 protein coding genes
Amino Acid sequences of all 1617 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. necrophorum 1_1_36S v1

Genome map and functional annotation table
Raw genome in fasta format (2.29 mb)
DNA sequences of all 2125 protein coding genes
Amino Acid sequences of all 2125 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow

F. necrophorum 25286 v1

Genome map and functional annotation table (Map coming soon, the rest is functional)
Raw genome in fasta format (2.67 mb)
DNA sequences of all 2413 protein and RNA coding genes
Amino Acid sequences of all 2343 protein coding genes
Link to NCBI Sequence Read Archive Deposition
Link to NCBI BioProject
CSV file of functional annotations (PFAM, Interpro, GO) FusoPortal genome assembly and annotation work flow
FusoPortal genome assembly and annotation work flow Here is a downloadable PDF of the tree above that contains links to each genome and sequence reads in the databases in which they were deposited. This tree was adapated from Manson McGuire et al, mBio 2014, from the laboratory of Ashlee Earl.

Analysis of genome quality

Raw Illumina and MinION data

Phred Scores and Pauvre plots

Full Genomes

All genomes have been checked for quality using CheckM, and the file for each analysis can be found here: CheckM on FusoPortal genomes