F. necrophorum 1_1_36S_FusoPortal_Gene_1988

InterPro predicted function: PRD domain;Mga helix-turn-helix domain;PTS EIIA type-2 domain
InterPro Accessions: IPR011608;IPR007737;IPR002178

Link to full Interpro analysis


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Return to complete Genome Map of F. necrophorum 1_1_36S

FASTA file of all annotated F. necrophorum 1_1_36S genes - Amino Acids | FASTA file of all annotated F. necrophorum 1_1_36S genes - DNA

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Hidden Markov Model (HMMScan) for domains: 1_1_36S_FusoPortal_Gene_1988.out

Amino Acids: 686

ORF FASTA file - Amino Acids

MSISGKKIILLHYIEKNIEEVSKNLGISERTIRYRIKSLNEFFVDEKINYKITIKNGIIK GSGNFSNLLESVKREDYDFSKEERIEIIHFLLLLLSYGCKADAICYLLNISRSTLKSDMK FVRKKLAEKNLQICSRTKRGLIIQGREILIRKLLWEEYKKILRIEGKNVLFLEEANRKKV FLIKKYTNLECISSIIVYLENLKLDLNKKISDEAYQFTAIYLLIAVNRLKHGIFIKQEVA NQDFIKSTSEFQAVQKNIFILERKYQIKLNIVEIIKITEFILGAHSYNFNDSFYENWIDI EGLADDLITRVNQKMDVDISMDRTLREGLINHLVPTIYRLKNGIELQSSIYQEVMKKYSS FYYIVKKSLERIEKFIGKEFSENETSFFVIHFVLSIKRVLKEIEKKKKILIVCGLGYGIS NLLKQELEELFDIEVKDIIPLNHLRETKLEGLDLIISTTEIDWKEISIPIIKVSSLLNKD NIAALLTAGIQTRKNQVNISKLVEIIQKYCYIWDKEGLVNSLVCYDDKRKSKYFKEYEIL SLSDMLPVRNIKVLDKVCDWQKAMIEAGEILYENGYITKSYINKMIEKVKELGVYMLIGD SVILPHAEPEKNVMKTGISYLQLKEYVMFPENILIKHIFVLASRDKKEHINGVLALKQNL DEHKLKEILESCKTVQEMFDIFKNIG

Coding DNA - Genome Coordinates: 2118140-2116080 | Orientation: Reverse

ORF FASTA file - Coding DNA

ATGTCTATAAGTGGAAAAAAAATTATATTGTTGCATTATATAGAAAAAAATATTGAAGAAGTTTCCAAGA ATTTAGGAATATCTGAAAGAACAATCAGATATAGAATCAAATCTTTAAATGAATTTTTTGTAGATGAAAA AATAAACTATAAAATTACAATAAAAAACGGAATTATAAAAGGTTCTGGAAATTTTTCCAACTTATTAGAA TCTGTGAAAAGGGAAGACTACGACTTTTCGAAAGAAGAAAGAATCGAGATTATACATTTTCTTTTACTGT TATTAAGTTATGGATGTAAAGCTGATGCAATATGTTATTTGCTCAATATCAGCAGAAGTACTTTAAAATC AGATATGAAATTTGTGCGGAAAAAGTTGGCCGAGAAAAACCTACAAATTTGTTCTAGAACAAAAAGAGGT CTTATTATTCAAGGAAGAGAGATTTTAATTAGAAAATTACTTTGGGAAGAATATAAGAAAATTTTAAGAA TTGAAGGAAAAAATGTTCTTTTTTTAGAAGAAGCAAATAGAAAAAAAGTATTTCTTATCAAAAAATATAC AAATTTAGAATGTATTTCTAGTATTATTGTGTATTTAGAAAATTTAAAGTTAGATTTAAATAAAAAAATT TCAGATGAGGCATATCAGTTTACTGCTATTTATCTTTTAATAGCAGTAAATAGATTGAAACATGGAATTT TTATAAAACAGGAAGTAGCAAATCAAGATTTTATAAAATCTACTTCTGAATTTCAAGCGGTACAAAAAAA TATTTTTATTTTAGAAAGAAAATATCAAATAAAATTAAATATAGTAGAAATCATAAAAATAACCGAATTT ATTTTAGGAGCACATAGCTATAATTTTAATGATTCATTCTATGAGAATTGGATTGATATTGAAGGATTAG CAGATGATTTGATTACTAGAGTGAATCAAAAAATGGATGTCGATATTTCTATGGATAGAACTTTAAGAGA AGGATTGATAAATCATTTAGTTCCTACAATATATAGATTAAAAAATGGAATAGAGCTTCAAAGTTCAATT TATCAGGAAGTCATGAAAAAATATTCTAGCTTTTATTACATAGTTAAAAAATCTTTAGAAAGGATAGAAA AATTTATTGGAAAAGAGTTTTCAGAAAATGAGACTTCCTTTTTTGTTATTCATTTCGTACTTTCCATAAA AAGAGTATTGAAAGAAATTGAAAAAAAGAAAAAAATTTTAATTGTTTGTGGTCTGGGATATGGAATTTCC AATCTTTTAAAACAGGAATTAGAAGAACTTTTTGATATAGAAGTAAAAGATATTATTCCTTTAAATCATT TACGAGAGACCAAATTAGAAGGACTAGACCTTATTATTTCAACAACTGAAATTGATTGGAAAGAGATTTC CATTCCTATTATAAAAGTCAGCAGCTTATTAAACAAAGATAATATCGCAGCTTTATTGACAGCGGGAATT CAAACTAGAAAAAATCAAGTTAATATTTCAAAACTAGTCGAAATTATCCAGAAGTATTGCTATATTTGGG ATAAAGAAGGACTAGTGAATAGCCTAGTCTGCTATGATGACAAAAGGAAGAGCAAATATTTTAAAGAATA TGAGATTCTTTCTCTATCGGATATGCTTCCTGTAAGAAATATAAAAGTATTAGACAAAGTTTGCGACTGG CAAAAAGCAATGATAGAAGCAGGAGAAATACTTTATGAGAATGGTTATATAACAAAGAGCTATATCAATA AAATGATTGAAAAAGTAAAGGAATTGGGAGTCTATATGTTAATAGGGGATTCTGTTATTCTTCCTCATGC GGAACCAGAGAAAAATGTGATGAAAACAGGAATAAGTTATCTACAATTAAAAGAATATGTAATGTTTCCT GAAAATATTTTAATTAAACACATATTTGTTTTAGCAAGTAGAGATAAAAAAGAACATATAAATGGAGTGC TAGCATTGAAACAAAATCTTGATGAACATAAGTTGAAAGAAATACTTGAAAGCTGTAAAACAGTTCAAGA GATGTTTGATATTTTTAAAAATATAGGATGA

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