F. varium 27725_FusoPortal_Gene_654

InterPro predicted function: "RNA polymerase sigma factor 54 interaction domain;DNA binding HTH domain
InterPro Accessions: IPR002078;IPR002197

Link to full Interpro analysis


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Return to complete Genome Map of F. varium 27725

FASTA file of all annotated F. varium 27725 genes - Amino Acids | FASTA file of all annotated F. varium 27725 genes - DNA

Additional Links

Hidden Markov Model (HMMScan) for domains: 27725_FusoPortal_Gene_654.out

Amino Acids: 569

ORF FASTA file - Amino Acids

MDLLNKVKGDISKYAETISQVINIDVEIMSKDLIRIAGTGRLKEKVGLDMTGESHVYEHV LTTGNTEIILSPREEKICQTCPSKYTCTEVLEISTPVMFNSEPIGVIGLICFDEKQKEEF ILKKDSYIKFLQQIALFISSRVYEANEKIMIENNNKVLMNIVDRIPDSIIITNENDKIEL INEKGIALFKLTDYEHKLIVSPIKNFLDKKEFSLSYADISHDVVGDIIYFPKNMGRFRTL YIFQESEKFKTYLHQLNYNFSKEFIFNSQEMEAVYSKIRKVAKTTSTVLITGESGTGKEV AAKAIHMNSNRADMPLVAVNCGAIPDTLMESEFFGYVKGAFTGANPKGKVGFFEQADKGT IFLDEIGDMPLPLQVKLLRVLQEKTISPVGSDKVKEIDIRIIAATNKNLEALVAEGKFRE DLYYRLNVFPIDIPPLRERPKDIEDLTNFFIAKYSQLFNIPIRSLSNEVMSIFLSYSWPG NIRELKNITEYIINVIEERDLMITVKHLPPKLTNSLNIKEIKTLAEIEKEAIETLLLKYG HSSKDKIKVANTLDISLATLYRKLKLYNL

Coding DNA - Genome Coordinates: 728783-730492 | Orientation: Forward

ORF FASTA file - Coding DNA

ATGGATTTATTAAATAAAGTAAAAGGCGATATATCAAAATATGCTGAAACTATTTCTCAAGTAATAAATA TAGATGTAGAAATTATGAGCAAAGATCTCATAAGAATAGCTGGTACTGGAAGATTAAAAGAAAAAGTTGG ACTTGATATGACTGGGGAATCTCATGTCTATGAGCATGTCTTAACAACTGGAAATACAGAGATTATCCTT TCTCCAAGAGAAGAAAAAATATGCCAAACCTGTCCTTCAAAATATACTTGTACAGAAGTATTGGAAATCT CAACTCCTGTTATGTTTAATTCTGAACCTATTGGAGTCATTGGTCTAATCTGTTTTGATGAAAAACAGAA AGAAGAATTTATCTTAAAAAAAGATTCATATATAAAATTTTTACAACAGATAGCTTTATTCATAAGTTCC AGAGTATATGAAGCCAATGAAAAAATAATGATAGAAAATAATAATAAAGTTCTTATGAATATAGTTGATA GAATTCCTGATTCTATTATTATAACTAATGAAAATGATAAAATTGAGCTTATCAATGAAAAGGGAATAGC TCTTTTTAAACTTACAGACTATGAACATAAACTCATAGTTTCACCTATAAAAAATTTTCTTGATAAAAAA GAATTTTCTCTTTCCTATGCTGACATTTCACACGACGTTGTAGGAGATATAATATACTTTCCCAAAAATA TGGGAAGATTTAGAACCTTGTATATATTTCAGGAATCTGAAAAATTTAAAACATACCTCCACCAATTAAA CTATAATTTTTCTAAAGAGTTCATTTTTAATTCTCAGGAAATGGAAGCTGTATATTCAAAAATAAGAAAA GTTGCAAAAACAACATCAACTGTTCTCATTACAGGGGAAAGCGGAACTGGAAAAGAAGTAGCCGCAAAAG CTATTCATATGAACAGTAACAGAGCTGATATGCCCCTTGTTGCAGTCAATTGTGGAGCCATTCCAGATAC TCTTATGGAAAGCGAATTTTTTGGATATGTAAAGGGAGCTTTTACAGGAGCAAACCCGAAAGGGAAAGTG GGATTTTTTGAACAGGCTGATAAAGGAACTATATTTTTAGATGAAATTGGAGATATGCCTCTGCCTCTTC AAGTTAAACTTTTAAGAGTACTTCAGGAAAAAACTATCTCTCCTGTTGGTTCTGATAAGGTAAAAGAAAT AGATATAAGAATTATTGCTGCTACCAATAAAAATTTAGAAGCCCTTGTTGCTGAAGGCAAGTTTAGAGAA GATCTCTATTATAGATTAAATGTCTTTCCAATAGATATTCCTCCATTAAGAGAAAGACCTAAAGATATAG AAGATTTAACGAATTTCTTCATTGCTAAGTATTCTCAGCTTTTCAATATTCCTATAAGAAGTCTTTCAAA TGAAGTTATGTCTATTTTTCTTTCTTACAGCTGGCCTGGAAATATAAGAGAACTAAAAAATATAACTGAA TATATAATAAATGTAATTGAAGAAAGAGATTTGATGATAACTGTAAAACACTTACCACCAAAACTTACAA ATTCTCTTAATATCAAAGAAATAAAAACTTTAGCTGAAATAGAAAAAGAAGCTATTGAAACTCTTCTTTT AAAATATGGACATTCATCTAAAGATAAAATTAAAGTAGCTAACACACTTGATATAAGCCTTGCTACTCTT TATAGAAAATTAAAATTATATAATCTATAA

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