F. necrophorum 1_1_36S_FusoPortal_Gene_395

InterPro predicted function: "RNA polymerase Rpb1
InterPro Accessions: IPR007080;IPR007066;IPR007081;IPR000722;IPR007083

Link to full Interpro analysis


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Return to complete Genome Map of F. necrophorum 1_1_36S

FASTA file of all annotated F. necrophorum 1_1_36S genes - Amino Acids | FASTA file of all annotated F. necrophorum 1_1_36S genes - DNA

Additional Links

Hidden Markov Model (HMMScan) for domains: 1_1_36S_FusoPortal_Gene_395.out

Amino Acids: 1322

ORF FASTA file - Amino Acids

MGIRNFEKIKIKLASPEKIEEWSYGEVTKPETINYRTLNPEKDGLFCEKIFGPTKDWECA CGKYKRMRYKGLICEKCEVEVTKSKVRRERMGHIALAAPVSHIWYSKGTPNKMSLIIGLS PKELESVLYFARYIVTESEEDSLEIGKIITEKEYKLFKQLYGNKFEAYMGAEAILKLLER INLEELRIELEEELEEVSSAQKRKKIVKRLKIVRDFIASGNKPEWMILKNVPVIPADLRP MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGR RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK MALELYKPFIMRELVKRELATNIKTAKKLVEEADDKVWDVIEDVIQDHPVLLNRAPTLHR LSIQAFEPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLMLSPEAIMEAKLLMLAPNNII APSSGEPIAVPSQDMVMGCYYMTEKKKGAKGEGKVFSNIEQLLTAYQNQVIDTHALVKVR VNGEMVETTAGLVMFNEILPIQDRNYQRTIGKKELKNLIAYLYDEHGFTETADLINKLKN FGYHYSTLAGISVGVEDLVIPEEKKHLLAAADKQVEEIDADYKSGKIINEERYRKTIEVW SKTTDAVTKAMMDGLDKFNPVYMMANSGARGNTNQMRQLAGMRGNMADTQGRIIETPIKA NFREGLTVLEFFISSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNAEDCGTMQGIE VGDLISGGKVIEKLAERIRGRVLAEDLIHEGEILATRNTMIGKELLREIEEKGIKKVKIR SPLTCALEKGVCKKCYGMDLSNLKEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVASA SAAITQIKSENGGRISFRDIHTLNLNGEEIVVSQAGKVIVADNEYEVSSGSTLRVKEGDI IEEGTVLVTFDPYHIPLIAAQDGKVEYRELTPKKTYDEKYDVWQSLVVKAMDSGDVNPRV HILDKEGKKLGTYNIPYGAYMMVEDGAMVKKGDILAKIMKIGEGSKDITGGLPRVQELFE ARNPKGKAMLTEIDGRVEINNRKKKGMRVVTVKALDDSGDQREYLVPVGERLIVTDGLKV KAGDKITEGAISPFDVLNIKGLVAAEQFILESVQQVYRDQGVGVNDKHIEIIVKQMFKKV KIVDSGASLFLEDEVVEKRLVDLENKELAEKGKALIQYEPIIQGITKAAVNTGSFISAAS FQETTKVLSNAAIEGKVDYLEGLKENVIIGKKIPAGTGFSAYKNVAMKVQEEFGTELEAV EE

Coding DNA - Genome Coordinates: 408105-412073 | Orientation: Forward

ORF FASTA file - Coding DNA

ATGGGAATCAGAAATTTTGAAAAAATTAAAATTAAATTGGCATCTCCTGAAAAAATTGAAGAATGGTCAT ATGGGGAAGTAACGAAGCCGGAAACCATAAATTATAGAACGTTGAATCCGGAAAAAGACGGATTGTTCTG CGAAAAAATCTTTGGACCGACAAAAGATTGGGAATGTGCATGTGGAAAGTACAAGAGAATGCGATACAAA GGTTTGATTTGTGAAAAATGTGAAGTGGAAGTGACAAAATCGAAAGTCAGAAGAGAAAGAATGGGGCATA TTGCTTTGGCAGCCCCTGTTTCGCACATTTGGTATTCCAAAGGAACTCCAAATAAAATGTCTTTGATTAT CGGCTTATCTCCAAAAGAATTGGAATCTGTATTGTATTTTGCGAGATACATTGTTACGGAAAGCGAGGAA GACAGCTTAGAAATCGGAAAAATCATCACGGAAAAAGAATACAAGTTGTTTAAACAGTTGTATGGAAATA AGTTTGAAGCTTACATGGGTGCGGAAGCGATTTTAAAATTGTTGGAACGAATCAATTTAGAAGAATTGAG AATTGAGTTGGAAGAGGAATTGGAAGAAGTTTCTTCCGCTCAAAAACGGAAGAAAATTGTAAAACGTTTG AAAATTGTTCGAGATTTTATTGCTTCCGGAAATAAACCGGAATGGATGATCTTAAAGAATGTTCCCGTGA TTCCCGCAGATTTACGTCCTATGGTACAATTGGACGGAGGAAGATTTGCGACTTCGGATTTGAATGATTT GTATCGAAGAGTCATCAATCGAAACAATCGTTTGAAAAAATTATTGGAAATTCGAGCCCCTGAAATCGTT GTAAAAAATGAAAAAAGAATGTTACAGGAAGCTGTAGACGCCTTGATTGACAATGGTCGAAGAGGAAAGC CGGTGGTAGCTCAAAACAACAGAGAATTGAAATCCTTGTCCGATATGTTGAAAGGAAAACAAGGACGTTT CCGACAAAATTTGTTGGGAAAACGGGTAGACTATTCAGCACGGTCTGTTATCGTGGTAGGACCGTCTTTG AAGATGAATCAATGTGGAATTCCTAAGAAAATGGCTTTGGAATTGTACAAACCGTTTATTATGAGAGAAT TGGTAAAACGGGAATTGGCAACCAATATTAAAACAGCGAAAAAATTGGTTGAAGAAGCTGATGACAAGGT TTGGGATGTCATTGAAGATGTCATCCAGGATCACCCGGTTTTATTGAACAGAGCTCCGACTTTGCATAGA TTGTCGATTCAAGCATTTGAACCGGTTTTGATTGAAGGAAAGGCAATTCGACTGCATCCTTTGGTTTGTT CCGCCTTCAACGCCGACTTCGACGGAGACCAAATGGCAGTGCATTTAATGTTATCTCCGGAAGCTATCAT GGAAGCAAAATTATTAATGCTGGCACCGAATAATATCATTGCTCCGTCCAGCGGGGAACCGATTGCAGTC CCTTCTCAAGATATGGTCATGGGATGTTATTATATGACAGAAAAGAAAAAGGGAGCCAAGGGAGAAGGGA AGGTCTTTTCCAATATTGAGCAGTTATTGACGGCTTATCAAAATCAAGTCATTGATACTCATGCTCTTGT CAAAGTCAGAGTTAATGGAGAAATGGTAGAAACGACTGCAGGATTGGTAATGTTCAATGAAATTTTACCG ATACAAGATAGAAACTATCAAAGGACAATCGGAAAGAAAGAATTGAAAAATTTGATCGCATACTTATATG ATGAACATGGTTTCACAGAAACGGCGGATTTAATCAACAAGTTAAAGAATTTCGGTTACCATTATTCCAC TTTGGCAGGAATTTCCGTAGGAGTCGAAGATTTGGTGATTCCGGAAGAGAAGAAACATTTATTGGCGGCT GCGGACAAACAGGTGGAAGAAATCGATGCCGATTATAAATCCGGAAAGATTATCAATGAAGAACGATATC GAAAAACAATTGAAGTTTGGTCTAAAACAACAGATGCCGTTACAAAAGCAATGATGGACGGATTGGATAA ATTTAATCCGGTATATATGATGGCGAATTCAGGAGCACGGGGAAATACAAACCAAATGCGTCAATTAGCC GGAATGAGAGGAAATATGGCGGATACGCAAGGGCGTATCATCGAAACTCCAATCAAGGCAAATTTCCGAG AAGGATTGACCGTTTTGGAATTCTTTATTTCTTCTCACGGAGCGAGAAAGGGATTGGCCGATACCGCACT TCGAACTGCCGATTCAGGATACTTAACGAGAAGATTGGTGGATATTTCTCACGAAGTGATTGTCAATGCG GAAGATTGCGGAACGATGCAAGGAATTGAAGTAGGAGACTTGATTTCCGGAGGAAAAGTCATTGAAAAAT TGGCGGAAAGAATCAGGGGAAGAGTCTTGGCGGAGGACCTAATCCACGAGGGAGAAATCTTAGCCACTCG AAATACGATGATTGGAAAAGAACTGCTTCGAGAAATTGAGGAAAAAGGAATCAAAAAAGTAAAAATTCGA TCTCCTTTGACTTGTGCTTTGGAAAAAGGAGTCTGCAAAAAATGTTACGGTATGGACTTGTCCAACTTAA AAGAAATTTTATTAGGAGAAGCCGTGGGAGTTGTTGCAGCACAGTCTATCGGAGAACCGGGAACACAACT TACCATGAGAACCTTCCATACCGGAGGGGTAGCAAGCGCTTCGGCAGCAATTACACAAATCAAATCGGAA AATGGAGGACGAATTTCTTTCCGAGATATTCATACCTTGAACTTGAATGGAGAAGAAATTGTCGTGAGTC AGGCAGGAAAAGTCATTGTAGCAGACAATGAATATGAAGTTTCTTCGGGATCCACTCTACGAGTGAAAGA GGGAGACATCATTGAAGAGGGAACGGTATTGGTAACCTTCGACCCATATCACATTCCATTGATTGCAGCT CAAGACGGAAAAGTCGAATATCGAGAATTGACACCGAAGAAGACCTATGATGAAAAATATGATGTTTGGC AATCCTTGGTGGTTAAAGCCATGGACAGTGGAGATGTTAACCCTCGAGTTCATATTTTAGACAAAGAGGG GAAAAAGTTAGGAACTTACAACATTCCTTATGGAGCCTACATGATGGTGGAAGACGGAGCTATGGTCAAA AAGGGAGATATCCTTGCAAAGATTATGAAAATCGGAGAGGGATCCAAGGATATTACAGGAGGTCTTCCAA GAGTACAAGAATTGTTTGAGGCAAGAAATCCAAAAGGAAAAGCAATGCTTACGGAAATTGACGGAAGAGT GGAAATCAATAATCGTAAGAAGAAAGGAATGCGAGTCGTTACGGTAAAAGCTCTGGATGATTCCGGAGAC CAACGGGAATATTTGGTTCCTGTGGGAGAACGTCTGATTGTTACGGACGGATTGAAGGTAAAAGCAGGAG ATAAGATTACCGAAGGAGCAATTTCTCCTTTTGACGTATTAAATATTAAAGGTTTGGTCGCAGCGGAACA GTTTATCTTGGAATCGGTACAACAAGTATATCGGGATCAAGGGGTAGGCGTGAACGACAAACATATAGAA ATCATTGTAAAACAAATGTTTAAGAAGGTAAAAATCGTTGATTCCGGAGCCTCTTTGTTCTTGGAAGATG AAGTGGTGGAAAAGAGATTGGTGGACTTGGAAAATAAAGAATTGGCGGAAAAAGGAAAGGCCTTAATTCA ATACGAGCCAATTATTCAAGGAATTACCAAAGCGGCTGTCAATACGGGAAGTTTCATTTCCGCAGCCTCT TTCCAAGAAACGACAAAAGTTCTTTCCAATGCGGCAATTGAAGGAAAGGTTGACTATTTGGAAGGATTGA AAGAAAATGTCATTATCGGAAAGAAAATTCCGGCAGGAACAGGATTCTCAGCCTATAAAAATGTAGCGAT GAAAGTACAGGAAGAATTCGGGACAGAATTGGAAGCGGTAGAAGAATAG

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